PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678461446
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family NF-YB
Protein Properties Length: 185aa    MW: 21082.1 Da    PI: 6.7188
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678461446genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB172.83.6e-5424118195
      NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                vreqdrf+Pianv+rim+k+lP +akis+daket+qecvse+isf+tsea+d+cqre+rkti+++d+lwa+++lGf+dy+epl++yl++yre++g
  678461446  24 VREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITSEANDRCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYREFDG 118
                69******************************************************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.9E-5119127IPR009072Histone-fold
SuperFamilySSF471134.97E-3927127IPR009072Histone-fold
PfamPF008083.8E-263094IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.4E-175876No hitNo description
PROSITE patternPS0068506177IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.4E-177795No hitNo description
PRINTSPR006151.4E-1796114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0033613Molecular Functionactivating transcription factor binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MHSPEIARGL PALPLLPQNS ECIVREQDRF MPIANVIRIM RKILPPHAKI SDDAKETIQE  60
CVSEYISFIT SEANDRCQRE QRKTITAEDV LWAMSKLGFD DYIEPLTLYL HRYREFDGGE  120
RGSVKRMVEH SGGMGFPLFH NTPPFHSGTH HGYFPTPPAM NLFKDAGPGM EGPPGFMDRF  180
PPRKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A3e-4025115393NF-YB
4awl_B3e-4025115494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A3e-4025115494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095910.11e-74PREDICTED: nuclear transcription factor Y subunit B-6
SwissprotQ84W669e-64NFYB6_ARATH; Nuclear transcription factor Y subunit B-6
TrEMBLS8DRX08e-82S8DRX0_9LAMI; Leafy cotyledon 1-like protein (Fragment)
STRINGVIT_00s0956g00020.t013e-70(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.23e-65nuclear factor Y, subunit B6